Submissions from 2024
Curated dataset of asphaltene structures, Madison Franke, Selsela Arsala, Frozan Tahiry, Simon-Olivier Gingras, and Arun K. Sharma
A comparative analysis of OpenET for evaluating evapotranspiration in California almond orchards, Kyle Knipper, Martha Anderson, Nicolas Bambach, Forrest Melton, Zac Ellis, Yun Yang, John Volk, Andrew J. McElrone, William Kustas, Matthew Roby, Will Carrara, Sebastian Castro, Ayse Kilic, Joshua B. Fisher, Anderson Ruhoff, Gabriel B. Senay, Charles Morton, Sebastian Saa, and Richard G. Allen
Long-term tracking captures the timing of ontogenetic niche shifts in northeast Pacific white sharks, Ryan K. Logan, James M. Anderson, Echelle S. Burns, Yamilla Samara Chacon, Ryan Freedman, Emiliano García-Rodríguez, Elizabeth Jahn, Kady Lyons, Emily N. Meese, Zachariah S. Merson, John O'Sullivan, Patrick T. Rex, Emily Spurgeon, Brian S. Stirling, Connor F. White, Chuck Winkler, Salvador Jorgensen, Oscar Sosa-Nishizaki, and Christopher G. Lowe
Nitrogen credits after peanut (Arachis hypogaea L.), Michael J. Mulvaney, Joseph E. Iboyi, Kipling S. Balkcom, David Jordan, Brendan Zurweller, and Arun Jani
Geography, Climate, and Habitat Shape the Microbiome of the Endangered Rock Gnome Lichen (Cetradonia linearis), Julianna Paulsen, Jessica L. Allen, Nathan Morris, Jenna Dorey, Jenifer B. Walke, and S. Elizabeth Alter
Machine learning to identify structural motifs in asphaltenes, Arun K. Sharma, Selsela Arsala, James Brady, Madison Franke, Shelby Franke, Supreet Gandhok, Simon-Olivier Gingras, Ana Gomez, Katelyn Huie, Kayla Katz, Samantha Kozlo, Mateo Longoria, Levi Molnar, Nathaly Peña, and Sarina Regis
Azospirillum brasilense Inoculation in a Maize–Urochloa–Rice Cropping System Promotes Soil Chemical and Biological Changes and Increases Productivity, Philippe Solano Toledo Silva, Nayara Siviero Garcia, Fernando Shintate Galindo, Orivaldo Arf, Thiago Assis Rodrigues Nogueira, Arun Dilipkumar Sharma, and Ana Maria Rodrigues Cassiolato
Two sequential gene expression programs bridged by cell division support long-distance collective cell migration, Jingjing Sun, Ayse Damla Durmaz, Aswini Babu, Frank Macabenta, and Angelike Stathopoulos
Submissions from 2023
Soybean Seed Enrichment with Cobalt and Molybdenum as an Alternative to Conventional Seed Treatment, Cassio Hamilton Abreu-Junior, Gabriel Asa Corrêa Gruberger, Paulo Henrique Silveira Cardoso, Paula Wellen Barbosa Gonçalves, Thiago Assis Rodrigues Nogueira, Gian Franco Capra, and Arun Dilipkumar Jani
Resource recovery of biological residues from the Brazilian poultry industry in mitigating environmental impacts: A life cycle assessment (LCA) approach, Edmar Costa Alves, Israel Henrique dos Santos Alves, Bruna Borges Soares, Aurélio Ferreira Borges, Arshad Jalal, Arun Dilipkumar Jani, Cassio Hamilton Abreu-Junior, Gian Franco Capra, and Thiago Assis Rodrigues Nogueira
Predictive Ecology and Management of Phyllosphere Microbial Communities Through Cross-Scale Synthesis, David W. Armitage, Morgan E. Carter, Robin A. Choudhury, Mitja N. P. Remus-Emsermann, Cindy E. Morris, Johan H. Leveau, Linda L. Kinkel, and José Pablo Dundore-Arias
Potential Soil Remineralizers from Silicate Rock Powders (SRP) as Alternative Sources of Nutrients for Agricultural Production (Amazon Region), Paulo Roberto Rodrigues Benevides Filho, Alessandra Elisa Blaskowski, Marina Nascimento Ramos, Luís Gustavo Frediani Lessa, Antonio Nilson Zamunér Filho, Cassio Hamilton Abreu-Junior, Arun Dilipkumar Jani, Gian Franco Capra, and Thiago Assis Rodrigues Nogueira
Ionic partitioning of KCl in AOT reverse micelles from molecular dynamics simulations, Max Crowder, Isabel Lizarraga, Joshua D. Patterson, and Arun K. Sharma
Computational Analysis of Water Dynamics in AOT Reverse Micelles, Max Crowder, Frozan Tahiry, Isabel Lizarraga, Stephanie Rodriguez, Nathaly Peña, and Arun K. Sharma
More Than the Sum of Its Parts: Unlocking the Power of Network Structure for Understanding Organization and Function in Microbiomes, J P. Dundore-Arias, M Michalska-Smith, M Millican, and L L. Kinkel
Serratia marcescens Outbreak at a Correctional Facility: Environmental Sampling, Laboratory Analyses and Genomic Characterization to Assess Sources and Persistence, Donna Ferguson, Rahil Ryder, Rawni Lunsford, Arie Dash, Amanda Kamali, Akiko Kimura, John Crandall, Rituparna Mukhopadhyay, Heather Dowless, Nancy Ortiz, and Nathaniel K. Jue
Filming a hidden resource: The soil in the seventh art narrative, Antonio Ganga, Ludmila Ribeiro Roder, Enzo Antônio Paganini, Arun Dilipkumar Jani, Cassio Hamilton Abreu-Junior, Thiago Assis Rodrigues Nogueira, and Gian Franco Capra
Constructed Technosols as a Soil Rebuilding Technique to Reclaim Abandoned Limestone Quarries in the Mediterranean Region: A Field Study, Eleonora Grilli, Renata Concetta Vigliotti, Antonio Fiorentino, Monica Scognamiglio, Luigi Rossetti, Thiago Assis Rodrigues Nogueira, Arun Dilipkumar Jani, Cassio Hamilton Abreu-Junior, Ludmila Ribeiro Roder, Antonio Ganga, and Gian Franco Capra
Bioavailability of Macro and Micronutrients Across Global Topsoils: Main Drivers and Global Change Impacts, Raúl Ochoa-Hueso, Manuel Delgado-Baquerizo, Anita C. Risch, Louise Ashton, David Augustine, Nicolas Bélanger, Scott Bridgham, Andrea J. Britton, Viktor J. Bruckman, J. Julio Camarero, Gerard Cornelissen, John A. Crawford, Feike A. Dijkstra, Amanda Diochon, Stevan Earl, James Edgerley, Howard Epstein, Andrew Felton, Julien Fortier, Daniel Gagnon, Ken Greer, Hannah M. Griffiths, Caroline Halde, Hans Martin Hanslin, Lorna I. Harris, Jeremy A. Hartsock, Paul Hendrickson, Knut Anders Hovstad, Jia Hu, Arun D. Jani, Kelcy Kent, Deirdre Kerdraon-Byrne, Sat Darshan S. Khalsa, Derrick Y. F. Lai, France Lambert, Jalene M. LaMontagne, Stéphanie Lavergne, Beth A. Lawrence, Kim Littke, Abigail C. Leeper, Mark A. Licht, Mark A. Leibig, Joshua S. Lynn, Janet F. Maclean, Vegard Martinsen, Marshall D. McDaniel, Anne C. S. McIntosh, Jessica R. Miesel, Jim Miller, Michael J. Mulvaney, Gerardo Moreno, Laura Newstead, Robin J. Pakeman, Jan Pergl, Bradley D. Pinno, Juan Piñeiro, Kathleen Quigley, Troy M. Radtke, Paul Reed, Víctor Rolo, Jennifer Rudgers, P. Michael Rutherford, Emma J. Sayer, Lilia Serrano-Grijalva, Maria Strack, Nicole Sukdeo, Andy F. S. Taylor, Benoit Truax, Leonard J. S. Tsuji, Natasja van Gestel, Brenda M. Vaness, Kevin Van Sundert, Michaela Vítková, Robert Weigel, Meaghan J. Wilton, Yuriko Yano, Ewing Teen, and Eric Bremer
Analysis of Trace Volatile Compounds Emitted from Flat Ground and Formed Bed Anaerobic Soil Disinfestation in Strawberry Field Trials on California’s Central Coast, Kali Prescott, Stefanie Kortman, Josue Duque, Joji Muramoto, Carol Shennan, Gloria Greenstein, and Arlene L.M. Haffa
Two Stories to Tell: Different Student Outcome Measures Correlate with Different Instructor Adaptations to COVID-19, Quentin Charles Sedlacek, Lily Amador, Emily Beasley, Krysta Malech, Viviana Vigil, Heather Haeger, Corin V. Gray, and Corin D. Slown
Common Bean Productivity and Micronutrients in the Soil–Plant System under Residual Applications of Composted Sewage Sludge, Gabriela Souza de Oliveira, Arshad Jalal, Adrielle Rodrigues Prates, Marcelo Carvalho Minhoto Teixeira Filho, Rodrigo Silva Alves, Luana Corrêa Silva, Raimunda Eliane Nascimento do Nascimento, Philippe Solano Toledo Silva, Orivaldo Arf, Fernando Shintate Galindo, Fernando Carvalho Oliveira, Cassio Hamilton Abreu-Junior, Arun Dilipkumar Jani, Gian Franco Capra, and Thiago Assis Rodrigues Nogueira
Submissions from 2022
Environmental DNA metabarcoding is a promising method for assaying fish diversity in cenotes of the Yucatán Peninsula, Mexico, S. Elizabeth Alter and Jairo Arroyave
Using Environmental DNA to Detect Whales and Dolphins in the New York Bight, S. Elizabeth Alter, Carissa D. King, Emily Chou, Sam Chew Chin, Melinda Rekdahl, and Howard C. Rosenbaum
Tolerance and Adaptability of Tomato Genotypes to Saline Irrigation, Carlos Eduardo Da Silva Oliveira, Tiago Zoz, Arshad Jalal, Eduardo Pradi Vendruscolo, Thiago Assis Rodrigues Nogueira, Arun Dilipkumar Jani, and Marcelo Carvalho Minhoto Teixeira Filho
Removing Systemic Barriers to Equity, Diversity, and Inclusion: Report of the 2019 Plant Science Research Network Workshop “Inclusivity in the Plant Sciences”, Natalie A. Henkhaus, Wolfgang Busch, Angela Chen, Adán Colón-Carmona, Maya Cothran, Nicolas Diaz, José Pablo Dundore-Arias, Michael Gonzales, Denita Hadziabdic, Rebecca A. Hayes, Gustavo C. MacIntosh, Ali Na, Blessing Nyamasoka-Magonziwa, Dianne Pater, F. Christopher Peritore-Galve, Tara Phelps-Durr, Kerry Rouhier, Delanie B. Sickler, John H. Starnes, Quentin R. Tyler, Evelyn Valdez-Ward, Miguel E. Vega-Sánchez, Ron R. Walcott, Joy K. Ward, Sarah E. Wyatt, Felipe Zapata, Ash T. Zemenick, and David B. Stern
Student Attitudes Contribute to the Effectiveness of a Genomics CURE, David Lopatto, Anne G. Rosenwald, Rebecca C. Burgess, Catherine Silver Key, Melanie Van Stry, Matthew Wawersik, Justin R. DiAngelo, Amy T. Hark, Matthew Skerritt, Anna K. Allen, Consuelo Alvarez, Sara Anderson, Cindy Arrigo, Andrew Arsham, Daron Barnard, James E. Bedard, Indrani Bose, John M. Braverman, Martin G. Burg, Paula Croonquist, Chunguang Du, Sondra Dubowsky, Heather Eisler, Matthew A. Escobar, Michael Foulk, Thomas Giarla, Rivka L. Glaser, Anya L. Goodman, Yuying Gosser, Adam Haberman, Charles Hauser, Shan Hays, and Carina E. Howell
Deciphering the Microbiome: Integrating Theory, New Technologies, and Inclusive Science, Kathryn C. Milligan-McClellan, José Pablo Dundore-Arias, Jonathan L. Klassen, Ashley Shade, Linda L. Kinkel, and Benjamin E. Wolfe
Composted Sewage Sludge Sustains High Maize Productivity on an Infertile Oxisol in the Brazilian Cerrado, Adrielle Rodrigues Prates, Karen Cossi Kawakami, Aline Renée Coscione, Marcelo Carvalho Minhoto Teixeira Filho, Orivaldo Arf, Cassio Hamilton Abreu-Junior, Fernando Carvalho Oliveira, Adônis Moreira, Fernando Shintate Galindo, Zhenli He, Arun Dilipkumar Jani, Gian Franco Capra, Antonio Ganga, and Thiago Assis Rodrigues Nogueira
Composted Sewage Sludge Application in a Sugarcane Seedling Nursery: Crop Nutritional Status, Productivity, and Technological Quality Implications, Rafael dos Santos Silva, Arshad Jalal, Raimunda Eliane Nascimento do Nascimento, Nathércia Castro Elias, Karen Cossi Kawakami, Cassio Hamilton Abreu-Junior, Fernando Carvalho Oliveira, Arun Dilipkumar Jani, Zhenli He, Fengliang Zhao, Marcelo Carvalho Minhoto Teixeira Filho, Raffaella Rossetto, Gian Franco Capra, and Thiago Assis Rodrigues Nogueira
Composted Sewage Sludge Application Reduces Mineral Fertilization Requirements and Improves Soil Fertility in Sugarcane Seedling Nurseries, Rafael dos Santos Silva, Arshad Jalal, Raimunda Eliane Nascimento do Nascimento, Nathércia Castro Elias, Karen Cossi Kawakami, Cassio Hamilton Abreu-Junior, Fernando Carvalho Oliveira, Arun Dilipkumar Jani, Zhenli He, Fengliang Zhao, Marcelo Carvalho Minhoto Teixeira Filho, Raffaella Rossetto, Gian Franco Capra, and Thiago Assis Rodrigues Nogueira
Addressing DRIS (Diagnosis and Recommendation Integrated System) norms with potentially toxic elements for assessing the nutritional status of Eucalyptus amended with sewage sludge, Paulo Henrique Silveira Cardoso, Bruno Rodrigues Alves, Beatriz Papa Casagrande, Clayton Alcarde Alvares, Thiago Assis Rodrigues Nogueira, Gian Franco Capra, Arun Dilipkumar Jani, and Cassio Hamilton Abreu-Junior
A Course-Based Undergraduate Research Experience (CURE) in Biology: Developing Systems Thinking through Field Experiences in Restoration Ecology, Erin Stanfield, Corin D. Slown, Quentin Sedlacek, and Suzanne E. Worcester
Submissions from 2021
Evolutionary Responses of Marine Organisms to Urbanized Seascapes, S. Elizabeth Alter, Laraib Tariq, James Keanu Creed, and Emmanuel Megafu
Commentary: Unbiasing Genome-Based Analyses of Selection: An Example Using Iconic Shark Species, Nicholas J. Marra, Michael J. Stanhope, Nathaniel K. Jue, Vincent P. Richards, Stephen J. O’Brien, Agostinho Antunes, and Mahmood S. Shivji
Trade-Offs Between Reducing Complex Terminology and Producing Accurate Interpretations from Environmental DNA: Comment on “Environmental DNA: What's behind the term?” by Pawlowski et al., (2020), Naiara Rodriguez‐Ezpeleta, Olivier Morissette, Colin W. Bean, Shivakumara Manu, Pritam Banerjee, Anaïs Lacoursière-Roussel, Kingsly C. Beng, S. Elizabeth Alter, Fabian Roger, Luke E. Holman, Kathryn A. Stewart, Michael T. Monaghan, Quentin Mauvisseau, Luca Mirimin, Owen S. Wangensteen, Caterina M. Antognazza, Sarah J. Helyar, Hugo de Boer, Marie-Eve Monchamp, Reindert Nijland, Cathryn L. Abbott, Hideyuki Doi, Matthew A. Barnes, Matthieu Leray, Pascal I. Hablützel, and Kristy Deiner
Fishes of the Mfimi River in the central Congo basin of the Democratic Republic of Congo. Kasai ecoregion or part of the Cuvette Centrale?, Melanie L. J. Stiassny, S. Elizabeth Alter, Tobit L. D. Liyandja, Myriam Y. Modimo, and Raoul J. C. Monsembula Iyaba
Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities, Pajau Vangay, Josephine Burgin, Anjanette Johnston, Kristen L. Beck, Daniel C. Berrios, Kai Blumberg, Shane Canon, Patrick Chain, John-Marc Chandonia, Danielle Christianson, Sylvain V. Costes, Joan Damerow, William D. Duncan, Jose Pablo Dundore-Arias, Kjiersten Fagnan, Jonathan M. Galazka, Sean M. Gibbons, David Hays, Judson Hervey, Bin Hu, Bonnie L. Hurwitz, Pankaj Jaiswal, Marcin P. Joachimiak, Linda Kinkel, Joshua Ladau, Stanton L. Martin, Lee Ann McCue, Kayd Miller, Nigel Mouncey, Chris Mungall, Evangelos Pafilis, T B. Reddy, and Lorna Richardson
Submissions from 2020
Genomic Analysis of the Only Blind Cichlid Reveals Extensive Inactivation in Eye and Pigment Formation Genes, Matthew L. Aardema, Melanie L J Stiassny, and S Elizabeth Alter
Carbon Amendments Influence Composition and Functional Capacities of Indigenous Soil Microbiomes, José Pablo Dundore-Arias, Sarah C. Castle, Laura Felice, Ruth Dill-Macky, and Linda L. Kinkel
Community-driven Metadata Standards for Agricultural Microbiome Research, J. P. Dundore-Arias, E. A. Eloe-Fadrosh, L. M. Schriml, G. A. Beattie, F. P. Brennan, P. E. Busby, R. B. Calderon, S. C. Castle, J. B. Emerson, S. E. Everhart, K. Eversole, K. E. Frost, J. R. Herr, A. I. Huerta, A. S. Iyer-Pascuzzi, A. K. Kalil, J. E. Leach, J. Leonard, J. E. Maul, B. Prithiviraj, M. Potrykus, N. R. Redekar, J. A. Rojas, K. A. T. Silverstein, D. J. Tomso, S. G. Tringe, B. A. Vinatzer, and L. L. Kinkel
Plant Science Decadal Vision 2020–2030: Reimagining the Potential of Plants for a Healthy and Sustainable Future, Natalie Henkhaus, Madelaine Bartlett, David Gang, Rebecca Grumet, Ingrid Jordon‐Thaden, Argelia Lorence, Eric Lyons, Samantha Miller, Seth Murray, Andrew Nelson, Chelsea Specht, Brett Tyler, Thomas Wentworth, David Ackerly, David Baltensperger, Philip Benfey, James Birchler, Sreekala Chellamma, Roslyn Crowder, Michael Donoghue, Jose Pablo Dundore‐Arias, Jacqueline Fletcher, Valerie Fraser, Kelly Gillespie, Lonnie Guralnick, Elizabeth Haswell, Mitchell Hunter, Shawn Kaeppler, Stefan Kepinski, Fay‐Wei Li, Sally Mackenzie, Lucinda McDade, Ya Min, Jennifer Nemhauser, Brian Pearson, Peter Petracek, Katie Rogers, Ann Sakai, Delanie Sickler, Crispin Taylor, Laura Wayne, Ole Wendroth, Felipe Zapata, and David Stern
Facilitating Growth through Frustration: Using Genomics Research in a Course-Based Undergraduate Research Experience, Aparna Sreenivasan
Submissions from 2015
Drosophila Muller F Elements Maintain a Distinct Set of Genomic Properties Over 40 Million Years of Evolution, Aparna Sreenivasan
Submissions from 2014
A Central Support System Can Facilitate Implementation and Sustainability of a Classroom-Based Undergraduate Research Experience (CURE) in Genomics, Aparna Sreenivasan
A Course-Based Research Experience: How Benefits Change with Increased Investment in Instructional Time, Aparna Sreenivasan